Publications

D. Haws, T. Hodge, R. Yoshida, Optimality of the Neighbor Joining Algorithm and Faces of the Balanced Minimum Evolution Polytope, submitted to Bulletin of Mathematical Biology, 2010.

E. Arnaoudova, D. Haws, P. Huggins, J. Jaromczyk, N. Moore, C. Schardl, R. Yoshida, Statistical Phylogenetic Tree Analysis Using Differences of Means, submitted to Frontiers in Biology, 2010.

P.M. Huggins, W. Li, D. Haws, T. Friedrich, J. Liu, and R. Yoshida, Bayes Estimators for Phylogentic Reconstruction, accepted Systematic Biology, 2009.

J. De Loera, D. Haws, J. Lee and A. O'Hair, Computation in Multicriteria Matroid Optimization, Submitted to Journal of Experimental Algorithmics , 2009.

J. De Loera, D. Haws, and M. Koppe, Ehrhart Polynomials of Matroid Polytopes and Polymatroids, Journal of Discrete
and Computational Geometry, (May 9, 2008), eprint arXiv:0710.4346.

J. De Loera, D. Haws, R. Hemmecke, P. Huggins, and R. Yoshida, A Computational Study of Integer Programming
thms Based on Barvinok's Rational Functions, 2, The Journal of Discrete Optimization, vol. 2 (June 30, 2005), pp.
135-144.

J. De Loera, D. Haws, R. Hemmecke, P. Huggins, B. Sturmfels, and R. Yoshida, Short Rational Functions for Toric
Algebra and Applications, The Journal of Symbolic Computation, vol. 38 no. 2 (2004), pp. 959--973.

J. De Loera, D. Haws, R. Hemmecke, P. Huggins, and R. Yoshida, Three Kinds of Integer Programming Algorithms
based on Barvinok's Rational Functions, in Integer Programming and Combinatorial Optimization: 10th International IPCO
Conference, edited by D. Bienstock and G. Nemhauser (2004), pp. 244 -- 255, Springer.